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Introduction/Mission
TMAtrix is a multidisciplinary data and image repository built to support molecular profiling initiatives, particularly those utilizing the tissue microarray platform. Pathology, clinical, and gene expression data, as well as administrative tools, are included in the data model.
People/Facilities
The system was built with support of the Department of Pathology and the Ken and Wendy Ruby Gift through the Jonsson Comprehensive Cancer Center (JCCC), both of the David Geffen School of Medicine at UCLA.
UCLA Tissue Microarray Core Facility:
David Seligson, M.D. Assistant Professor, Facility Director, Department of Pathology and Laboratory Medicine
Sheila Tze, Data Manager, Staff Research Associate
Computing Technologies Research Lab (Ctrl):
Robert Dennis, Ph.D. Ctrl Director, Department of Biological Chemistry
Khy Huang, Computer Programmer/Analyst
Stefan Deusch, Ph.D. Computer Programmer/Analyst
Val Stamboltsian, Ph.D. Computer Programmer/Analyst
Nick Young, Computer Programmer/Analyst
Gene Lacson, Web Designer
Hardware/Software
Development Hardware: Intel Linux dual 2.4GHZ CPU Dell server
Application Framework: Opensource Expresso from JCorporate
Database: Oracle 8i Relational Database Management System (RDBMS)
Programming Language: Java
Application Server Software: TomCat Apache
Data Fields: greater than 700
Security: HIPAA compliant record management (no individual identifiers). Codebook managed external to the TMAtrix system.
Links
Technical information - Under construction
Database Tour - Under construction
Database Demo - Under construction
Open Source Software Download - Under construction
