====== Welcome to the Horvath lab Wiki! ======


===== About this wiki =====

  * This wiki is maintained by graduate student Tova Fuller; I can be reached at tova.fuller@ucla.edu
  * It is a tool for organizing ideas, concepts, definitions and code in UCLA's [[http://www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork|Horvath Lab]]
    * For more information, please visit [[http://www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/wiki/?idx=references|my references page]]  


===== Navigating this site =====
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  * Visit the [[http://www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/wiki/start?do=index|index]] for easy navigation. 
  * The categories I have made include:
    * [[http://www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/wiki/?idx=references|A Short Reading List & References]]:
      * References to papers, talks and websites of interest, sorted by year
        * [[http://www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/wiki/references:2005|Papers pertaining to my work during the summer of 2005]]
        * [[http://www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/wiki/references:2006|Papers, etc. pertaining to my work during 2006]]
        * [[http://www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/wiki/references:2007|Papers, etc. pertaining to my work during 2007]]
    * [[http://www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/wiki/?idx=r|Some R Notes]]: 
      * Notes on and definitions of R commands when I was learning R a few years ago.  For a list of much better R resources, please visit [[http://del.icio.us/tova.fuller/r|my del.icio.us R links page]].
    * [[http://www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/wiki/?idx=regression|Regression Theory]]
      * Dictionary of terms for the beginner
    * [[http://www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/wiki/?idx=dictionary|Dictionary]]: 
      * Information regarding the theory of gene co-expression network analysis
    * [[http://www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/wiki/?idx=simulation|Simulation Project, 2005]]: 
      * Notes specifically pertaining to a simulation project I worked on during the summer of 2005

===== What's a wiki? =====
  * A wiki is - in so many words - a searchable database that can be used for organizing information.  It is  easily altered and maintained in a hierarchical manner. I use [[http://wiki.splitbrain.org/wiki:dokuwiki|DokuWiki]] as you probably guessed by the logo at the top.
  * Learn more:
    * About [[http://wiki.splitbrain.org/wiki:dokuwiki|DokuWiki]], the software used to create this wiki
    * [[http://www.wikipedia.org/|Wikipedia]]

===== External Links of Interest =====
  * My [[http://www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/DifferentialNetworkAnalysis/|Differential Network Analysis]] webpage; it includes tutorials and materials regarding my recent publication, [[http://www.springerlink.com/content/u062q54775437344/fulltext.html|Weighted Gene Co-expression Network Analysis Strategies Applied to Mouse Weight]]
  * My [[http://del.icio.us/tova.fuller|del.icio.us page]] (feel free to network with me).  
del.icio.us is a social bookmarking site that organizes linked URLs via tags and bundles; note that my page is littered with tons of non-science information that you may ignore :-).